Phynteny
Phynteny: Synteny-based annotation of bacteriophage genes.
Approximately 65% of all bacteriophage (phage) genes cannot be attributed a known biological function.
Phynteny is annotation tool for bacteriophage genomes that integrates protein language models and gene synteny (the conserved gene order across phages) to
assign hypothetical phage proteins to a PHROG category.
phynteny-transformer leverages a transformer architecture with attention mechanisms and long short term memory to capture the positional information of genes.