Many Bioinformatics tools for performing a variety of analyses have been created by current and past members of FAME. Browse our currently-maintained, open-source, and freely available Bioinformatics tools by category below.
FOCUS: An Alignment-Free Model To Identify Organisms In Metagenomes Using Non-Negative Least Squares Usage.
Hecatomb is a pipeline for accurately classifying viral sequences in metagenome samples.
PHANOTATE is a tool to annotate phage genomes.
PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes.
PRINSEQ is used for easy and rapid quality control and data preprocessing of genomic and metagenomic datasets.
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data