Check out our amazing, well-maintained, open-source, and freely available Bioinformatics software!

Atavide

Atavide is a simple, yet complete workflow for metagenomics data analysis!

FOCUS

FOCUS: An Alignment-Free Model To Identify Organisms In Metagenomes Using Non-Negative Least Squares Usage.

Hecatomb

Hecatomb is a pipeline for accurately classifying viral sequences in metagenome samples.

Koverage

Koverage lets you quickly and easily get coverage statistics from a collection of reads and an assembly.

MetaSnek

MetaSnek is a Python package containing miscellaneous functions for metagenomic pipelines!

PHANOTATE

PHANOTATE is a tool to annotate phage genomes.

Phables

Phables is a tool developed to resolve bacteriophage genomes using phage bubbles in viral metagenomic data.

Phispy

PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes.

Phynteny

Phynteny: Synteny-based annotation of bacteriophage genes.

Prinseq

PRINSEQ is used for easy and rapid quality control and data preprocessing of genomic and metagenomic datasets.

Reneo

Reneo means to unravel or untangle in Latin. Reneo is a software developed to unravel or untangle high-quality genomes from viral communities (including both...

SUPER-FOCUS

SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data

Snaketool and Nektool

Snaketool and Nektool are frameworks for building command line tools using the Snakemake or Nextflow workflow managers

Spae

Phage toolkit to detect and assemble phage candidates for phage therapy.

Trimnami

Trim lots of sequencing reads all at once!